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Back 💡 MCP: Model Context Protocol 🛠️ : Emerging Concept in AI Infrastructure : In Vector Databases and Retrieval-Augmented Generation (RAG) Systems 05 May, 2025

MCP: Model Context Protocol, which is an emerging concept in AI infrastructure, particularly in vector databases and retrieval-augmented generation (RAG) systems.


🧩 What is Model Context Protocol (MCP)?

Model Context Protocol (MCP) is a standardized protocol designed to define and manage the context that is sent to a language model or AI model during inference (prompting). It formalizes the way external tools, like vector databases or memory systems, interact with LLMs (Large Language Models).

Think of it as an API contract or schema that helps systems decide:

  • What information is relevant to retrieve?

  • How should that information be structured?

  • What metadata and source context should be included?

  • How should context be ranked, scored, or pruned before sending it to the model?


💡 Why MCP is Important

LLMs have token limits (context windows), and injecting irrelevant or redundant data can:

  • Decrease accuracy

  • Increase costs

  • Waste tokens

  • Confuse the model

MCP aims to optimize the context pipeline by standardizing the interface between:

  • Vector search tools (e.g., Weaviate, Pinecone, Qdrant)

  • Memory modules

  • Prompt templates

  • LLMs (OpenAI, Claude, Mistral, etc.)


🧠 Key Concepts in MCP

Component Description
Context Block A unit of retrievable or generated knowledge (e.g., a paragraph, code snippet)
Metadata Info like source, timestamp, type (text, image, code), trust score
Scoring/Ranking Mechanisms for relevance (semantic similarity, recency, etc.)
Token Budgeting Allocating a fixed number of tokens to the most relevant blocks
Compression Transforming content to fit more knowledge in fewer tokens
Formatting Structuring retrieved context (markdown, JSON, citations, etc.)
Filtering & Deduping Removing redundant or irrelevant content before passing to the model

🛠️ How MCP Fits into a RAG System

[User Query] → [Embedder] → [Vector DB Search] → 
[Model Context Protocol (MCP)] → [Prompt Template] → [LLM]

The MCP layer:

  • Prepares and filters the results from the DB

  • Packages them cleanly (e.g., “Top 5 answers with source and timestamp”)

  • Ensures alignment with the prompt and context window


🔄 Example Use Case

Use case: Building a chatbot with enterprise docs

  • 📝 You have hundreds of documents (HR, Legal, IT)

  • 🧠 They are embedded and stored in a vector DB

  • 💬 When a user asks a question:

    • The system runs a semantic search

    • MCP determines the top chunks to return

    • Filters old duplicates

    • Structures the selected context for input into the LLM

    • LLM responds with the most informed answer


✅ Benefits of Using MCP

  • 🎯 Improved response relevance

  • 🧠 Token-efficient context usage

  • 🔌 Easier integration with multiple tools and databases

  • 📦 Structured, auditable context delivery

  • 🔍 Fine-grained control over memory, search, and formatting